alterlab-ieu/alterlab-academic-skills

229 resources in this repository

🎯211Skills🔌17Plugins🏪1Marketplaces

🎯Skills211

🎯alterlab-teaching-design🎯Skill

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alterlab-teaching-design

🎯alterlab-zarr🎯Skill

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🎯alterlab-thesis-supervisor🎯Skill

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alterlab-thesis-supervisor

🎯alterlab-literature-review🎯Skill

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alterlab-literature-review

🎯alterlab-astropy🎯Skill

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alterlab-astropy

🎯alterlab-pydeseq2🎯Skill

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alterlab-pydeseq2

🎯alterlab-clinical-reports🎯Skill

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alterlab-clinical-reports

🎯alterlab-alphafold-db🎯Skill

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alterlab-alphafold-db

🎯alterlab-arboreto🎯Skill

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alterlab-arboreto

🎯alterlab-seaborn🎯Skill

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alterlab-seaborn

🎯alterlab-tiledbvcf🎯Skill

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alterlab-tiledbvcf

🎯alterlab-plotly🎯Skill

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alterlab-plotly

🎯alterlab-arxiv🎯Skill

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🎯alterlab-cbioportal🎯Skill

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alterlab-cbioportal

🎯alterlab-molecular-dynamics🎯Skill

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alterlab-molecular-dynamics

🎯alterlab-phylogenetics🎯Skill

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alterlab-phylogenetics

🎯alterlab-diffdock🎯Skill

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alterlab-diffdock

🎯alterlab-citation-mgmt🎯Skill

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alterlab-citation-mgmt

🎯alterlab-digital-humanities🎯Skill

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alterlab-digital-humanities

🎯alterlab-survey-design🎯Skill

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alterlab-survey-design

🎯alterlab-stable-baselines3🎯Skill

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alterlab-stable-baselines3

🎯alterlab-uniprot🎯Skill

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alterlab-uniprot

🎯alterlab-datamol🎯Skill

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alterlab-datamol

🎯alterlab-biorxiv🎯Skill

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alterlab-biorxiv

🎯alterlab-gwas🎯Skill

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🎯alterlab-iso13485🎯Skill

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alterlab-iso13485

🎯alterlab-deep-research🎯Skill

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alterlab-deep-research

🎯alterlab-statsmodels🎯Skill

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alterlab-statsmodels

🎯alterlab-geo🎯Skill

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🎯alterlab-venue-templates🎯Skill

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alterlab-venue-templates

🎯alterlab-infographics🎯Skill

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alterlab-infographics

🎯alterlab-scikit-bio🎯Skill

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alterlab-scikit-bio

🎯alterlab-brenda🎯Skill

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alterlab-brenda

🎯alterlab-matplotlib🎯Skill

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alterlab-matplotlib

🎯alterlab-bioservices🎯Skill

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alterlab-bioservices

🎯alterlab-cobrapy🎯Skill

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alterlab-cobrapy

🎯alterlab-umap🎯Skill

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🎯alterlab-transformers🎯Skill

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alterlab-transformers

🎯alterlab-bindingdb🎯Skill

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alterlab-bindingdb

🎯alterlab-interpro🎯Skill

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alterlab-interpro

🎯alterlab-open-science🎯Skill

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alterlab-open-science

🎯alterlab-deeptools🎯Skill

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alterlab-deeptools

🎯alterlab-latex-posters🎯Skill

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alterlab-latex-posters

🎯alterlab-gget🎯Skill

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🎯alterlab-alpha-vantage🎯Skill

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alterlab-alpha-vantage

🎯alterlab-scientific-schematics🎯Skill

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alterlab-scientific-schematics

🎯alterlab-metabolomics-wb🎯Skill

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alterlab-metabolomics-wb

🎯alterlab-string-db🎯Skill

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alterlab-string-db

🎯alterlab-depmap🎯Skill

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alterlab-depmap

🎯alterlab-clinpgx🎯Skill

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alterlab-clinpgx

🎯alterlab-clinical-decision🎯Skill

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alterlab-clinical-decision

🎯alterlab-qutip🎯Skill

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🎯alterlab-clinvar🎯Skill

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alterlab-clinvar

🎯alterlab-pptx-posters🎯Skill

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alterlab-pptx-posters

🎯alterlab-adaptyv🎯Skill

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alterlab-adaptyv

🎯alterlab-dask🎯Skill

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🎯alterlab-peer-review🎯Skill

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alterlab-peer-review

🎯alterlab-usfiscaldata🎯Skill

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alterlab-usfiscaldata

🎯alterlab-aeon🎯Skill

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🎯alterlab-statistical-analysis🎯Skill

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alterlab-statistical-analysis

🎯alterlab-denario🎯Skill

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alterlab-denario

🎯alterlab-treatment-plans🎯Skill

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alterlab-treatment-plans

🎯alterlab-torch-geometric🎯Skill

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alterlab-torch-geometric

🎯alterlab-cirq🎯Skill

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🎯alterlab-zinc-db🎯Skill

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alterlab-zinc-db

🎯alterlab-chembl🎯Skill

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alterlab-chembl

🎯alterlab-pubmed🎯Skill

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alterlab-pubmed

🎯alterlab-datacommons🎯Skill

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alterlab-datacommons

🎯alterlab-biopython🎯Skill

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alterlab-biopython

🎯alterlab-drugbank🎯Skill

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alterlab-drugbank

🎯alterlab-academic-career🎯Skill

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alterlab-academic-career

🎯alterlab-social-science-methods🎯Skill

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alterlab-social-science-methods

🎯alterlab-anndata🎯Skill

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alterlab-anndata

🎯alterlab-sympy🎯Skill

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🎯alterlab-vaex🎯Skill

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🎯alterlab-bgpt-search🎯Skill

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alterlab-bgpt-search

🎯alterlab-scientific-brainstorm🎯Skill

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alterlab-scientific-brainstorm

🎯alterlab-cosmic🎯Skill

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alterlab-cosmic

🎯alterlab-torchdrug🎯Skill

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alterlab-torchdrug

🎯alterlab-clinicaltrials🎯Skill

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alterlab-clinicaltrials

🎯alterlab-eda🎯Skill

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🎯alterlab-pyopenms🎯Skill

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alterlab-pyopenms

🎯alterlab-cellxgene🎯Skill

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alterlab-cellxgene

🎯alterlab-openalex🎯Skill

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alterlab-openalex

🎯alterlab-deepchem🎯Skill

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alterlab-deepchem

🎯alterlab-dnanexus🎯Skill

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alterlab-dnanexus

🎯alterlab-research-grants🎯Skill

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alterlab-research-grants

🎯alterlab-scientific-writing🎯Skill

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alterlab-scientific-writing

🎯alterlab-uspto🎯Skill

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🎯alterlab-benchling🎯Skill

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alterlab-benchling

🎯alterlab-timesfm🎯Skill

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alterlab-timesfm

🎯alterlab-gene-db🎯Skill

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alterlab-gene-db

🎯alterlab-scikit-learn🎯Skill

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alterlab-scikit-learn

🎯alterlab-glycoengineering🎯Skill

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alterlab-glycoengineering

🎯alterlab-perplexity🎯Skill

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alterlab-perplexity

🎯alterlab-fda🎯Skill

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🎯alterlab-research-ethics🎯Skill

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alterlab-research-ethics

🎯alterlab-etetoolkit🎯Skill

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alterlab-etetoolkit

🎯alterlab-pysam🎯Skill

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🎯alterlab-qualitative-methods🎯Skill

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alterlab-qualitative-methods

🎯alterlab-medchem🎯Skill

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alterlab-medchem

🎯alterlab-scvi-tools🎯Skill

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alterlab-scvi-tools

🎯alterlab-open-notebook🎯Skill

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alterlab-open-notebook

🎯alterlab-geopandas🎯Skill

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alterlab-geopandas

🎯alterlab-ensembl🎯Skill

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alterlab-ensembl

🎯alterlab-scientific-slides🎯Skill

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alterlab-scientific-slides

🎯alterlab-pymoo🎯Skill

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🎯alterlab-esm🎯Skill

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🎯alterlab-geniml🎯Skill

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alterlab-geniml

🎯alterlab-gnomad🎯Skill

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alterlab-gnomad

🎯alterlab-labarchive🎯Skill

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alterlab-labarchive

🎯alterlab-research-pipeline🎯Skill

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alterlab-research-pipeline

🎯alterlab-geomaster🎯Skill

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alterlab-geomaster

🎯alterlab-mermaid🎯Skill

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alterlab-mermaid

🎯alterlab-neurokit2🎯Skill

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alterlab-neurokit2

🎯alterlab-pydicom🎯Skill

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alterlab-pydicom

🎯alterlab-monarch🎯Skill

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alterlab-monarch

🎯alterlab-pathml🎯Skill

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alterlab-pathml

🎯alterlab-pymc🎯Skill

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🎯alterlab-kegg🎯Skill

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🎯alterlab-primekg🎯Skill

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alterlab-primekg

🎯alterlab-hypogenic🎯Skill

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alterlab-hypogenic

🎯alterlab-pufferlib🎯Skill

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alterlab-pufferlib

🎯alterlab-research-lookup🎯Skill

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alterlab-research-lookup

🎯alterlab-hmdb🎯Skill

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🎯alterlab-opentargets🎯Skill

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alterlab-opentargets

🎯alterlab-ena🎯Skill

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🎯alterlab-qiskit🎯Skill

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alterlab-qiskit

🎯alterlab-scikit-survival🎯Skill

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alterlab-scikit-survival

🎯alterlab-imaging-data-commons🎯Skill

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alterlab-imaging-data-commons

🎯alterlab-paper-2-web🎯Skill

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alterlab-paper-2-web

🎯alterlab-matchms🎯Skill

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alterlab-matchms

🎯alterlab-protocolsio🎯Skill

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alterlab-protocolsio

🎯alterlab-gtars🎯Skill

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🎯alterlab-pytdc🎯Skill

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🎯alterlab-networkx🎯Skill

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alterlab-networkx

🎯alterlab-scientific-viz🎯Skill

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alterlab-scientific-viz

🎯alterlab-parallel-web🎯Skill

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alterlab-parallel-web

🎯alterlab-pyhealth🎯Skill

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alterlab-pyhealth

🎯alterlab-scanpy🎯Skill

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alterlab-scanpy

🎯alterlab-pennylane🎯Skill

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alterlab-pennylane

🎯alterlab-opentrons🎯Skill

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alterlab-opentrons

🎯alterlab-gtex🎯Skill

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🎯alterlab-market-research🎯Skill

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alterlab-market-research

🎯alterlab-polars🎯Skill

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alterlab-polars

🎯alterlab-markitdown🎯Skill

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alterlab-markitdown

🎯alterlab-rowan🎯Skill

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🎯alterlab-pytorch-lightning🎯Skill

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alterlab-pytorch-lightning

🎯alterlab-scientific-thinking🎯Skill

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alterlab-scientific-thinking

🎯alterlab-pubchem🎯Skill

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alterlab-pubchem

🎯alterlab-generate-image🎯Skill

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alterlab-generate-image

🎯alterlab-flowio🎯Skill

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alterlab-flowio

🎯alterlab-ginkgo-cloud🎯Skill

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alterlab-ginkgo-cloud

🎯alterlab-edgartools🎯Skill

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alterlab-edgartools

🎯alterlab-hedgefund-monitor🎯Skill

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alterlab-hedgefund-monitor

🎯alterlab-paper-reviewer🎯Skill

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alterlab-paper-reviewer

🎯alterlab-omero🎯Skill

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🎯alterlab-rdkit🎯Skill

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🎯alterlab-pdb🎯Skill

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🎯alterlab-fred🎯Skill

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🎯alterlab-neuropixels🎯Skill

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alterlab-neuropixels

🎯alterlab-jaspar🎯Skill

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alterlab-jaspar

🎯alterlab-histolab🎯Skill

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alterlab-histolab

🎯alterlab-simpy🎯Skill

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🎯alterlab-pylabrobot🎯Skill

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alterlab-pylabrobot

🎯alterlab-scholar-eval🎯Skill

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alterlab-scholar-eval

🎯alterlab-pymatgen🎯Skill

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alterlab-pymatgen

🎯alterlab-scvelo🎯Skill

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alterlab-scvelo

🎯alterlab-paper-writer🎯Skill

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alterlab-paper-writer

🎯alterlab-latchbio🎯Skill

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alterlab-latchbio

🎯alterlab-pyzotero🎯Skill

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alterlab-pyzotero

🎯alterlab-modal🎯Skill

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🎯alterlab-hypothesis-gen🎯Skill

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alterlab-hypothesis-gen

🎯alterlab-fluidsim🎯Skill

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alterlab-fluidsim

🎯alterlab-reactome🎯Skill

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alterlab-reactome

🎯alterlab-shap🎯Skill

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🎯alterlab-molfeat🎯Skill

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alterlab-molfeat

🎯alterlab-lamindb🎯Skill

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alterlab-lamindb

🎯alterlab-mixed-methods🎯Skill

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alterlab-mixed-methods

🎯alterlab-link-health🎯Skill

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alterlab-link-health

🎯alterlab-qiime2-amplicon🎯Skill

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alterlab-qiime2-amplicon

🎯alterlab-citation-graph🎯Skill

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alterlab-citation-graph

🎯alterlab-blast🎯Skill

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🎯alterlab-citation-verifier🎯Skill

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alterlab-citation-verifier

🎯alterlab-skill-name🎯Skill

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alterlab-skill-name

🎯alterlab-test-selection-guard🎯Skill

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alterlab-test-selection-guard

🎯alterlab-squidpy-spatial🎯Skill

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alterlab-squidpy-spatial

🎯alterlab-recommendation-letters🎯Skill

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alterlab-recommendation-letters

🎯alterlab-workflow-orchestration🎯Skill

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alterlab-workflow-orchestration

🎯alterlab-nf-core-sarek🎯Skill

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alterlab-nf-core-sarek

🎯alterlab-syllabus-ai-policy🎯Skill

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alterlab-syllabus-ai-policy

🎯alterlab-yok-tez🎯Skill

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alterlab-yok-tez

🎯alterlab-dergipark🎯Skill

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alterlab-dergipark

🎯alterlab-accreditation-aol🎯Skill

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alterlab-accreditation-aol

🎯alterlab-pdf-extract🎯Skill

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alterlab-pdf-extract

🎯alterlab-rnaseq-quant🎯Skill

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alterlab-rnaseq-quant

🎯alterlab-trdizin🎯Skill

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alterlab-trdizin

🎯alterlab-yok-akademik🎯Skill

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alterlab-yok-akademik

🎯alterlab-results-transparency🎯Skill

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alterlab-results-transparency

🎯alterlab-grant-reporting🎯Skill

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alterlab-grant-reporting

🎯alterlab-akademik-tesvik🎯Skill

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alterlab-akademik-tesvik

🎯alterlab-tr-academic-style🎯Skill

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alterlab-tr-academic-style

🎯alterlab-docentlik-eligibility🎯Skill

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alterlab-docentlik-eligibility

🎯alterlab-tr-research-ethics🎯Skill

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alterlab-tr-research-ethics

🎯alterlab-preprint-deposition🎯Skill

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alterlab-preprint-deposition

🎯alterlab-aperta🎯Skill

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alterlab-aperta

🎯alterlab-redcap-cdisc🎯Skill

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alterlab-redcap-cdisc

🎯alterlab-tubitak-proposal🎯Skill

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alterlab-tubitak-proposal

🎯alterlab-preregistration-discipline🎯Skill

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alterlab-preregistration-discipline

🎯alterlab-yokatlas🎯Skill

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alterlab-yokatlas

🎯alterlab-kvkk-dmp🎯Skill

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alterlab-kvkk-dmp

🔌Plugins17

🔌alterlab-cheminformatics🔌Plugin

Chemistry and drug discovery (RDKit, docking, ADMET, mass spec) (12 skills)

sciencechemistrydrug-discovery

🔌alterlab-bioinformatics🔌Plugin

Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)

sciencegenomicsproteomics

🔌alterlab-core🔌Plugin

Core research-to-publication pipeline plus teaching and thesis tools (10 skills)

researchwritingpeer-review

🔌alterlab-databases🔌Plugin

Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (39 skills)

datadatabaseapi

🔌alterlab-finance-economics🔌Plugin

Economic and financial data (FRED, Alpha Vantage, SEC EDGAR, market research) (7 skills)

datafinanceeconomics

🔌alterlab-domain-specific🔌Plugin

Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)

sciencequantumgeospatial

🔌alterlab-document-tools🔌Plugin

Document and Markdown conversion (MarkItDown, Open Notebook) (3 skills)

productivitymarkdowndocument-conversion

🔌alterlab-visualization🔌Plugin

Publication-quality plotting and schematics (Matplotlib, Seaborn, Plotly) (9 skills)

productivityplottingmatplotlib

🔌alterlab-lab-integrations🔌Plugin

Laboratory platforms (Benchling, DNAnexus, Opentrons, Protocols.io) (9 skills)

sciencelab-automationbenchling

🔌alterlab-writing-tools🔌Plugin

Scientific writing, citations, grants, posters, and academic career (13 skills)

writingscientific-writingcitations

🔌alterlab-turkish-academia🔌Plugin

Turkish academic system workflows (YÖK, ÜAK, DergiPark, YÖK-Tez, TÜBİTAK, doçentlik) (12 skills)

researchturkish-academiayok

🔌alterlab-faculty-life🔌Plugin

Faculty research-lifecycle and academic administration (syllabus AI-policy, IRB/consent, post-award grant admin, recommendation letters, accreditation AoL) (6 skills)

productivityfacultyteaching

🔌alterlab-social-science-workflow🔌Plugin

Stage-gated social-science methods spine — orchestrator + 5 validity gates (design/identifying-assumption, measurement, sampling/power, reflexivity, inference) and 11 analysis modules (causal inference, complex-survey analysis, SEM/psychometrics, multilevel models, QCA, SNA, ABM, text-as-data, qualitative analysis, meta-analysis, missing data) (17 skills)

researchsocial-scienceresearch-design

🔌alterlab-methodology🔌Plugin

Research methodology and rigor scaffolds (Iron Laws, rationalization tables, decision flowcharts, systematic-reasoning checklists) (3 skills)

researchmethodologyresearch-rigor

🔌alterlab-clinical-research🔌Plugin

Clinical decision support, medical imaging, and regulatory workflows (7 skills)

scienceclinicalmedical-imaging

🔌alterlab-data-science🔌Plugin

Machine learning and statistics (scikit-learn, PyTorch, transformers, SHAP) (22 skills)

datamachine-learningstatistics

🔌alterlab-research-tools🔌Plugin

Search, discovery, Zotero, qualitative methods, ethics, and open science (14 skills)

researchliterature-searchzotero

🏪Marketplaces1

🏪AlterLab-IEU/AlterLab-Academic-Skills🏪Marketplace

239 evaluated academic Claude/agent skills across 17 research domains (bioinformatics, data science, clinical, social-science methods, Turkish academia & more). Executable eval per skill, deterministic citation verifier, research→write→review→publish pipeline, and a skill-finder front door. Claude Code, Cursor, Codex, Gemini CLI & Copilot.