🎯Skills120
Converts research artifacts, notes, and generated content into well-structured Markdown documentation during the Kosmos research workflow.
Generates interactive, publication-quality scientific visualizations from research data, supporting hypothesis exploration and result communication in Kosmos' autonomous research workflow.
Retrieves, processes, and integrates biological data and services from public APIs and databases to support scientific research and hypothesis generation within the Kosmos AI scientist framework.
Generates statistical data visualizations and plots using the Seaborn Python library to support data analysis and hypothesis exploration in scientific research workflows.
Generates PDF reports with scientific data visualizations and structured layouts for research findings in the Kosmos autonomous AI scientist workflow.
Analyzes raw scientific datasets to identify patterns, statistical relationships, distributions, and potential insights by applying statistical techniques, visualization methods, and automated expl...
Applies machine learning algorithms from scikit-learn to analyze and preprocess research data, enabling automated feature selection, model training, and predictive analysis within the Kosmos AI sci...
Retrieves and synthesizes relevant scientific literature and research papers for a given research objective, extracting key insights and potential hypotheses.
Retrieves and catalogs computational and data resources available for scientific research tasks within the Kosmos AI scientist workflow.
Generates and analyzes hypotheses related to underground geological formation processes, specifically focusing on the origin and development of hypogenic caves and karst systems.
Analyzes and integrates biomedical literature and multi-omics data to generate comprehensive biological insights and hypotheses for scientific research.
Generates and visualizes scientific diagrams, flowcharts, and schematic representations to help researchers understand complex experimental designs, research workflows, or scientific processes with...
Retrieves, processes, and analyzes zinc-related scientific data and metadata from specialized databases to support research workflows in the Kosmos autonomous AI scientist system.
Analyzes and generates taxonomic research strategies for scientific discovery by mapping potential experimental pathways and research approaches.
Manages and queries scientific literature and experimental data for the Kosmos AI scientist, enabling efficient information retrieval and knowledge graph construction during autonomous research wor...
Enables astronomical data analysis, coordinate transformations, and astrophysical calculations using the Astropy library within the Kosmos AI scientist's research workflow.
Retrieves and processes scientific publication metadata from the OpenAlex academic database to support literature review and hypothesis generation in scientific research workflows.
Enables automated robotic liquid handling and protocol execution for scientific experiments using Opentrons liquid handling robots within the Kosmos AI scientist workflow.
Retrieves genomic data and gene information from various biological databases using standardized query methods.
Generates scientific visualizations and plots using the matplotlib Python library within the Kosmos AI scientist's research and analysis workflows.
Performs survival analysis and predictive modeling using machine learning techniques from the scikit-survival library, enabling researchers to analyze time-to-event data and generate prognostic ins...
Analyzes deep learning model architectures, hyperparameters, and performance metrics to recommend optimization strategies and identify potential improvements.
Analyzes feature importance and impact using SHAP (SHapley Additive exPlanations) values to interpret machine learning model predictions and understand variable contributions.
Retrieves and processes FDA drug and medical device approval data for scientific research and hypothesis generation within the Kosmos AI scientist workflow.
Processes and analyzes genomic sequencing data using the Python pysam library, likely enabling genomic data manipulation and extraction within the Kosmos AI scientist's research workflow.
Retrieves and preprocesses recent preprint research papers from bioRxiv to provide up-to-date scientific literature for hypothesis generation and research analysis in the Kosmos AI scientist system.
Retrieves and processes protein structural data from the Protein Data Bank (PDB) for scientific analysis and hypothesis generation in molecular biology research workflows.
Generates and evaluates potential drug molecule candidates by analyzing chemical structures, predicting pharmacological properties, and assessing potential therapeutic interactions for medicinal ch...
Manages and organizes biological metadata and experimental data using a lightweight database and tracking system for scientific research workflows.
Retrieves and analyzes single-cell RNA sequencing data from the Human Cell Atlas using the cellxgene Census API, enabling comprehensive exploration of cell type-specific gene expression across diff...
Analyzes single-cell RNA sequencing data, performing dimensionality reduction, clustering, and visualization of cellular transcriptomics datasets using the Scanpy Python library.
Analyzes and manipulates complex network structures, generating graph-based representations of scientific relationships and performing network analysis tasks within the Kosmos AI scientist workflow.
Extracts, processes, and analyzes text content from Microsoft Word document files (.docx) for scientific research and literature review purposes within the Kosmos AI scientist workflow.
Extracts and analyzes pathological machine learning features from medical imaging data for scientific research and hypothesis generation.
Analyzes biological sequences, performs computational biology tasks, and generates Python code for bioinformatics research using Biopython library functions.
Integrates biological data and workflows from the Latch.bio platform into the Kosmos autonomous research system, enabling seamless import of genomic datasets, experimental protocols, and computatio...
Generates initial scientific hypotheses and research directions by analyzing existing literature, identifying knowledge gaps, and proposing novel research questions or experimental approaches withi...
Converts scientific research papers into structured web-friendly content, extracting key findings, methodology, and insights for online publication or knowledge sharing.
Transforms and processes time-dependent computational data for scientific research workflows within the Kosmos autonomous AI scientist system.
Systematically analyzes and synthesizes academic literature to extract key insights, identify research gaps, and provide a comprehensive overview of existing knowledge for a specific research objec...
Performs dimensionality reduction and visualization of high-dimensional scientific data using the UMAP (Uniform Manifold Approximation and Projection) algorithm to help reveal underlying patterns a...
Performs statistical modeling and regression analysis for scientific research workflows, enabling advanced statistical computations and hypothesis testing within the Kosmos AI scientist framework.
Manages and processes large-scale scientific datasets using the Zarr storage format, enabling efficient chunked, compressed storage and parallel access of multidimensional arrays in Python.
Validates and critically assesses research findings generated by the Kosmos AI scientist against established scientific standards, checking for methodological rigor, potential biases, and reproduci...
Generates scientific presentation slides by extracting key insights, visualizations, and structured content from research findings and knowledge graphs produced during the Kosmos autonomous researc...
Performs computational chemistry and molecular machine learning tasks using the DeepChem library, enabling automated hypothesis generation and screening of molecular properties and chemical interac...
Performs Bayesian statistical modeling and probabilistic inference using PyMC, enabling researchers to construct complex probabilistic models, estimate parameters, and quantify uncertainty in scien...
Retrieves, queries, and manages pharmacogenomic (PGx) clinical database information to support genetic variation and drug response research within the Kosmos AI scientist workflow.
Based on the README, while there's no explicit mention of a specific "geniml" skill, in the context of the Kosmos autonomous AI scientist project, "geniml" likely generates machine learning models ...
Identifies and evaluates potential research grant opportunities for scientific projects based on the research objective and domain.
Evaluates and refines scientific hypotheses by systematically analyzing their logical structure, potential biases, empirical evidence, and methodological soundness using structured critical reasoni...
Retrieves, filters, and structures clinical trial data from ClinicalTrials.gov to support hypothesis generation and experimental design in biomedical research workflows.
Performs symbolic mathematics computations and manipulations using the SymPy library, enabling algebraic transformations, equation solving, and mathematical reasoning within Kosmos research workflows.
Manages and transforms data flow between different computational components or stages within the Kosmos AI scientific research workflow, likely handling input/output operations and data pipeline co...
Integrates Kosmos research workflows with DNAnexus cloud platform for genomic data processing and computational genomics research tasks.
Processes and analyzes large-scale scientific datasets efficiently using the Vaex out-of-core DataFrame library, enabling high-performance data exploration and preprocessing for Kosmos research wor...
Retrieves and processes metabolomics experimental data and metadata from the Metabolomics Workbench public repository to support AI-driven scientific research and hypothesis generation.
Automates laboratory robotic instrument control and experimental protocol execution within the Kosmos AI scientist workflow.
Generates novel scientific hypotheses by analyzing existing literature, experimental data, and domain knowledge, identifying potential research directions and testable propositions.
Simulates scientific experiments and processes using discrete event simulation techniques to model complex research scenarios and validate experimental protocols within the Kosmos AI scientist work...
Processes and analyzes mass spectrometry data using the PyOpenMS library for proteomics research and protein identification workflows.
Processes and transforms annotated single-cell genomics data matrices for computational analysis and research workflows within the Kosmos AI scientist platform.
Analyzes health-related datasets, generates medical hypotheses, and performs computational health research tasks within the Kosmos AI scientist framework.
Parallelizes and distributes computational tasks across multiple cores or machines during scientific data processing and analysis workflows in the Kosmos AI research system.
Extracts, transforms, and validates molecular data for scientific research workflows within the Kosmos autonomous AI scientist system.
Predicts protein-ligand binding poses and binding affinities using advanced machine learning and molecular docking techniques.
Extracts and generates molecular feature representations for computational chemistry and materials science research tasks within the Kosmos autonomous AI scientist workflow.
Reads, processes, and manipulates Excel spreadsheet files for data analysis and scientific research workflows within the Kosmos autonomous AI scientist system.
Retrieves and processes genetic and disease association data from the Open Targets Platform to support hypothesis generation and literature-based discovery in biomedical research workflows.
Analyzes and processes biological sequence data, performing tasks like phylogenetic analysis, microbiome profiling, and computational biology computations using scikit-bio's scientific computing li...
Performs statistical analysis and hypothesis testing on research data to identify significant patterns, correlations, and potential scientific insights during autonomous research cycles.
Retrieves and processes protein sequence and annotation data from the UniProt protein database to support scientific research and hypothesis generation within the Kosmos AI scientist workflow.
Retrieves, processes, and provides structured access to protein structure data from the AlphaFold Protein Structure Database for scientific research and analysis within the Kosmos AI scientist work...
Evaluates scholarly publications and research papers for scientific credibility, methodological rigor, and potential contribution to the research objective by analyzing study design, statistical va...
Retrieves and processes patent data from the United States Patent and Trademark Office (USPTO) database to support scientific research and hypothesis generation within the Kosmos AI scientist workf...
Processes and analyzes polar/polarity-related scientific data using the Polars DataFrame library, enabling efficient data manipulation and statistical analysis for Kosmos research workflows.
Generates standardized template configurations for research venues or experimental settings to facilitate systematic scientific exploration within the Kosmos AI research workflow.
Generates long-term strategic research plans and tracks multi-cycle research progression across complex scientific domains, maintaining continuity and strategic coherence in autonomous research wor...
Synchronizes biological sequence data and experimental protocols between Kosmos and Benchling's laboratory management platform, enabling seamless data import, export, and tracking for AI-driven sci...
Searches scientific literature using perplexity-based relevance ranking to efficiently retrieve and filter research papers most pertinent to a specific research hypothesis or query.
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Manages and handles modal interactions or modal dialog windows within the Kosmos AI research workflow, likely facilitating user interface interactions or system state transitions during autonomous ...
Performs metabolic network analysis and flux balance modeling using the COBRApy library to simulate and analyze biochemical networks and metabolic pathways.
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Generates and manages a comprehensive catalog of computational tools and scientific software that can be dynamically selected and applied during autonomous research workflows.
Extracts and analyzes protein embeddings and representations using the Evolutionary Scale Model (ESM) for scientific research tasks within the Kosmos AI scientist workflow.
Retrieves, processes, and provides structured biological pathway data from the Reactome database for scientific research and hypothesis generation within the Kosmos AI scientist framework.
Manages and retrieves string-based data for scientific research, enabling efficient storage, lookup, and manipulation of text-based information within the Kosmos AI scientist's workflow.
Optimizes experimental design parameters using multi-objective evolutionary algorithms for scientific research workflows within the Kosmos autonomous AI scientist framework.
Analyzes and processes neurophysiological signals and data using the NeuroKit2 Python library, enabling advanced signal processing, feature extraction, and physiological data analysis within the Ko...
Matches and compares mass spectrometry data across different datasets to identify molecular similarities and potential structural relationships.
Generates personalized medical treatment strategies by analyzing patient data, medical literature, and potential therapeutic interventions using AI-driven hypothesis generation and experimental des...
Retrieves and processes scientific data from Data Commons, enabling the Kosmos AI scientist to access structured knowledge and research-relevant datasets for hypothesis generation and analysis.
Manages and abstracts computational resource allocation and sandboxing for executing research code safely across different computational environments within the Kosmos AI scientist workflow.
Processes and analyzes medical DICOM (Digital Imaging and Communications in Medicine) image files for scientific research and medical imaging tasks within the Kosmos autonomous AI scientist workflow.
Extracts, parses, and processes scientific PDF documents to enable literature review and knowledge extraction for autonomous research workflows.
Performs differential gene expression analysis using DESeq2 statistical method to identify significantly changed genes between experimental conditions in RNA-sequencing data.
Retrieves and processes genomic annotation data from the Ensembl database for biological research tasks within the Kosmos AI scientist workflow.
Retrieves, processes, and analyzes clinical variant data from the ClinVar database to support genetic research and variant interpretation within the Kosmos AI scientist workflow.
Simulates and analyzes fluid dynamics scenarios, generating computational models and visualizations of fluid behavior under different physical conditions.
Processes and analyzes graph-structured scientific data using PyTorch Geometric's machine learning algorithms for research hypothesis generation and knowledge graph construction.
Generates or manipulates PowerPoint presentations programmatically within the Kosmos AI scientist workflow, likely to help visualize or communicate research findings and experimental results.
Enables computational materials science analysis and manipulation of crystal structures using the PyMatGen library for generating, transforming, and analyzing material geometries and properties.
Transforms and preprocesses transformer model architectures and configurations for scientific research tasks within the Kosmos AI scientist workflow.
Retrieves, filters, and preprocesses scientific literature from PubMed to provide relevant research papers and metadata for the Kosmos AI scientist's hypothesis generation and literature review pro...
Manages and organizes scientific literature references, tracking citations, extracting key metadata, and ensuring proper attribution during autonomous research workflows.
Based on the README, I cannot confidently infer the specific function of the "denario" Claude Code skill. The README provides an overview of the Kosmos project as an autonomous AI scientific resear...
Retrieves and processes metabolic and biochemical data from the Human Metabolome Database (HMDB) to support scientific research and hypothesis generation within the Kosmos AI scientist framework.
Generates structured scientific manuscripts, research papers, and technical documentation by synthesizing research findings, organizing content systematically, and adhering to academic writing conv...
Extracts, transforms, and explores taxonomic and evolutionary tree data for scientific research workflows within the Kosmos autonomous AI scientist system.
Implements reinforcement learning training and evaluation using the Stable Baselines3 library for autonomous scientific experiment design and optimization within the Kosmos AI research workflow.