mims-harvard

mims-harvard/tooluniverse

70 resources in this repository

GitHub
🎯70

🎯Skills70

🎯tooluniverse-sequence-retrieval🎯Skill

Retrieves biological sequences from NCBI and ENA with precise gene disambiguation, accession handling, and comprehensive sequence metadata

tooluniverse-sequence-retrieval
🎯tooluniverse-literature-deep-research🎯Skill

Performs comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction for thorough scientific investigations.

tooluniverse-literature-deep-research
🎯tooluniverse-image-analysis🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-image-analysis
🎯tooluniverse🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse
🎯setup-tooluniverse🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

setup-tooluniverse
🎯tooluniverse-disease-research🎯Skill

An open-source platform that democratizes AI-powered scientific research by providing MCP server and agent skills for biomedical tool discovery, disease research, drug analysis, and protein studies via 150+ specialized tools.

tooluniverse-disease-research
🎯tooluniverse-drug-research🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-drug-research
🎯tooluniverse-chemical-compound-retrieval🎯Skill

Retrieves comprehensive chemical compound data from PubChem and ChEMBL, providing detailed profiles with identifiers, properties, and bioactivity information.

tooluniverse-chemical-compound-retrieval
🎯tooluniverse-protein-structure-retrieval🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-protein-structure-retrieval
🎯tooluniverse-target-research🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-target-research
🎯tooluniverse-sdk🎯Skill

ToolUniverse Python SDK skill for building AI scientist systems with programmatic access to 1000+ scientific tools for drug discovery, protein analysis, genomics, and literature research

tooluniverse-sdk
🎯tooluniverse-expression-data-retrieval🎯Skill

Retrieves comprehensive gene expression and multi-omics datasets from ArrayExpress and BioStudies with intelligent gene disambiguation and quality assessment.

tooluniverse-expression-data-retrieval
🎯tooluniverse-precision-oncology🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-precision-oncology
🎯tooluniverse-clinical-trial-design🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-clinical-trial-design
🎯tooluniverse-pharmacovigilance🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-pharmacovigilance
🎯tooluniverse-rare-disease-diagnosis🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-rare-disease-diagnosis
🎯devtu-optimize-skills🎯Skill

ToolUniverse is an open-source platform that provides over 18,000 AI scientist tools as MCP servers and agent skills, enabling AI coding agents to perform scientific tasks like bioinformatics analysis, drug discovery, and data processing.

devtu-optimize-skills
🎯devtu-create-tool🎯Skill

Generates scientific tool classes and configurations for ToolUniverse framework, ensuring proper structure, validation, and automated wrapper creation.

devtu-create-tool
🎯create-tooluniverse-skill🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

create-tooluniverse-skill
🎯devtu-optimize-descriptions🎯Skill

A skill for optimizing tool descriptions in ToolUniverse JSON configurations to improve clarity and usability. Reviews descriptions for missing prerequisites, unexpanded abbreviations, unclear parameters, and missing usage guidance.

devtu-optimize-descriptions
🎯tooluniverse-drug-repurposing🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-drug-repurposing
🎯tooluniverse-protein-therapeutic-design🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-protein-therapeutic-design
🎯tooluniverse-binder-discovery🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-binder-discovery
🎯devtu-auto-discover-apis🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

devtu-auto-discover-apis
🎯tooluniverse-infectious-disease🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-infectious-disease
🎯tooluniverse-drug-drug-interaction🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-drug-drug-interaction
🎯devtu-fix-tool🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

devtu-fix-tool
🎯tooluniverse-epigenomics🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-epigenomics
🎯tooluniverse-structural-variant-analysis🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-structural-variant-analysis
🎯tooluniverse-antibody-engineering🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-antibody-engineering
🎯tooluniverse-crispr-screen-analysis🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-crispr-screen-analysis
🎯tooluniverse-chemical-safety🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-chemical-safety
🎯devtu-github🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

devtu-github
🎯tooluniverse-network-pharmacology🎯Skill

A network pharmacology skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-network-pharmacology
🎯tooluniverse-systems-biology🎯Skill

A systems biology skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-systems-biology
🎯tooluniverse-clinical-trial-matching🎯Skill

A clinical trial matching skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-clinical-trial-matching
🎯tooluniverse-proteomics-analysis🎯Skill

A proteomics analysis skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-proteomics-analysis
🎯tooluniverse-multiomic-disease-characterization🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-multiomic-disease-characterization
🎯tooluniverse-metabolomics-analysis🎯Skill

A metabolomics analysis skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools that democratizes AI-powered scientific workflows.

tooluniverse-metabolomics-analysis
🎯tooluniverse-spatial-transcriptomics🎯Skill

A spatial transcriptomics skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-spatial-transcriptomics
🎯tooluniverse-gene-enrichment🎯Skill

A gene enrichment analysis skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-gene-enrichment
🎯tooluniverse-cancer-variant-interpretation🎯Skill

A cancer variant interpretation skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-cancer-variant-interpretation
🎯tooluniverse-precision-medicine-stratification🎯Skill

A precision medicine stratification skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-precision-medicine-stratification
🎯tooluniverse-rnaseq-deseq2🎯Skill

An RNA-seq DESeq2 analysis skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-rnaseq-deseq2
🎯tooluniverse-drug-target-validation🎯Skill

A drug-target validation skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-drug-target-validation
🎯tooluniverse-statistical-modeling🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-statistical-modeling
🎯tooluniverse-adverse-event-detection🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

tooluniverse-adverse-event-detection
🎯tooluniverse-multi-omics-integration🎯Skill

A multi-omics integration skill from ToolUniverse by Harvard, providing AI-powered tools for integrating genomics, proteomics, and metabolomics data in scientific research.

tooluniverse-multi-omics-integration
🎯tooluniverse-clinical-guidelines🎯Skill

A ToolUniverse skill for querying clinical guidelines, part of a platform that gives AI agents structured access to biomedical and scientific tools via MCP.

tooluniverse-clinical-guidelines
🎯tooluniverse-immunotherapy-response-prediction🎯Skill

An immunotherapy response prediction skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-immunotherapy-response-prediction
🎯tooluniverse-spatial-omics-analysis🎯Skill

A spatial omics analysis skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-spatial-omics-analysis
🎯protein-interaction-network-analysis🎯Skill

A protein interaction network analysis skill from ToolUniverse, an AI scientist toolkit from Harvard that democratizes scientific tool access through MCP-compatible Claude Code skills.

protein-interaction-network-analysis
🎯tooluniverse-gwas-trait-to-gene🎯Skill

Map genetic traits to associated genes using GWAS data, part of the ToolUniverse framework from Harvard's Zitnik Lab for democratizing AI scientists.

tooluniverse-gwas-trait-to-gene
🎯tooluniverse-immune-repertoire-analysis🎯Skill

An immune repertoire analysis skill from ToolUniverse, an open-source platform with 30,000+ biomedical research tools for AI-powered scientific workflows.

tooluniverse-immune-repertoire-analysis
🎯tooluniverse-gwas-drug-discovery🎯Skill

A tooluniverse gwas drug discovery skill from ToolUniverse by Harvard, an AI scientist toolkit democratizing scientific tool access.

tooluniverse-gwas-drug-discovery
🎯tooluniverse-phylogenetics🎯Skill

A tooluniverse phylogenetics skill from ToolUniverse by Harvard, an AI scientist toolkit democratizing scientific tool access.

tooluniverse-phylogenetics
🎯tooluniverse-gwas-study-explorer🎯Skill

Explore and query genome-wide association studies, part of the ToolUniverse genomics research framework from Harvard.

tooluniverse-gwas-study-explorer
🎯tooluniverse-variant-analysis🎯Skill

A variant analysis skill from ToolUniverse by Harvard, providing AI-powered genomic variant analysis tools for scientific research and bioinformatics.

tooluniverse-variant-analysis
🎯tooluniverse-gwas-snp-interpretation🎯Skill

A ToolUniverse skill for interpreting GWAS SNP data, enabling AI agents to analyze genome-wide association study results through structured scientific tool interfaces.

tooluniverse-gwas-snp-interpretation
🎯tooluniverse-gwas-finemapping🎯Skill

A tooluniverse gwas finemapping skill from ToolUniverse by Harvard, an AI scientist toolkit democratizing scientific tool access.

tooluniverse-gwas-finemapping
🎯tooluniverse-metabolomics🎯Skill

A tooluniverse metabolomics skill from ToolUniverse by Harvard, an AI scientist toolkit democratizing scientific tool access.

tooluniverse-metabolomics
🎯tooluniverse-polygenic-risk-score🎯Skill

Calculate polygenic risk scores from genetic variants, part of the ToolUniverse biomedical research framework from Harvard.

tooluniverse-polygenic-risk-score
🎯tooluniverse-variant-interpretation🎯Skill

A ToolUniverse skill for AI-assisted genetic variant interpretation, part of a platform that democratizes scientific tool access for AI agents via MCP and CLI interfaces.

tooluniverse-variant-interpretation
🎯tooluniverse-install-skills🎯Skill

A ToolUniverse skill that installs and configures other ToolUniverse scientific skills, providing a bootstrapping entry point for the AI scientist tool ecosystem.

tooluniverse-install-skills
🎯tooluniverse-custom-tool🎯Skill

Skill

tooluniverse-custom-tool
🎯devtu-self-evolve🎯Skill

Skill

devtu-self-evolve
🎯tooluniverse-single-cell🎯Skill

Skill

tooluniverse-single-cell
🎯devtu-docs-quality🎯Skill

ToolUniverse is an MCP server from Harvard MIMS providing access to a collection of AI tools via a standardized protocol for Claude Code and other agents.

devtu-docs-quality
🎯devtu-code-optimization🎯Skill

Skill

devtu-code-optimization
🎯metabolomics-research🎯Skill

Skill

metabolomics-research