Collection62 items

tondevrel/scientific-agent-skills

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🎯Skills62

🎯duckdb🎯Skill

Perform high-performance analytical queries and data processing on local databases using DuckDB's in-memory columnar SQL engine

duckdb
🎯opencv🎯Skill

Performs computer vision tasks like image processing, object detection, face recognition, and advanced visual analysis using OpenCV library functions

opencv
🎯numba🎯Skill

Accelerates numerical Python computations by compiling and optimizing NumPy and SciPy code for high-performance scientific computing

numba
🎯tqdm🎯Skill

Provides progress bar functionality for tracking and visualizing the progress of long-running Python loops and iterations with customizable display options.

tqdm
🎯transformers🎯Skill

Simplifies machine learning model loading, fine-tuning, and inference using Hugging Face's transformers library for NLP tasks

transformers
🎯matplotlib🎯Skill

Generates professional data visualizations and plots using Python's matplotlib library, enabling complex scientific and statistical graphing with ease

matplotlib
🎯mne🎯Skill

Analyzes and processes neuroimaging data, performing advanced signal processing, source localization, and visualization for EEG and MEG brain recordings

mne
🎯matplotlib-pro🎯Skill

Advanced data visualization with Matplotlib, generating publication-quality plots, custom styling, and complex scientific graphics for research and analysis.

matplotlib-pro
🎯plotly🎯Skill

Generates interactive, publication-quality scientific visualizations and dashboards using Plotly's advanced plotting capabilities for data exploration and presentation

plotly
🎯numpy🎯Skill

Performs advanced numerical computing tasks with NumPy, enabling efficient array manipulation, mathematical operations, and scientific computing workflows.

numpy
🎯geopandas🎯Skill

Analyze and manipulate geospatial data with advanced spatial operations, mapping, and geographic coordinate transformations using GeoPandas

geopandas
🎯pydicom🎯Skill

Reads, writes, and manipulates DICOM medical imaging files, enabling advanced processing and analysis of medical image data

pydicom
🎯numpy-low-level🎯Skill

Provides low-level NumPy array manipulation techniques, memory optimization, and performance-critical numerical computing strategies for scientific computing.

numpy-low-level
🎯xgboost-lightgbm🎯Skill

Trains and optimizes machine learning models using XGBoost and LightGBM for high-performance predictive analytics and classification tasks

xgboost-lightgbm
🎯jax🎯Skill

Accelerates numerical computing and machine learning with JAX's NumPy-like array operations, automatic differentiation, and GPU/TPU acceleration

jax
🎯pytorch-research🎯Skill

Streamlines PyTorch research workflows with advanced model design, training optimization, and reproducible experiment tracking capabilities

pytorch-research
🎯scipy🎯Skill

Performs advanced scientific and engineering computations using NumPy, linear algebra, optimization, signal processing, and statistical functions.

scipy
🎯rdkit🎯Skill

Performs cheminformatics tasks like molecular structure generation, property prediction, and chemical reaction simulation using RDKit library

rdkit
🎯cobrapy🎯Skill

Performs biochemical pathway modeling and simulation using the CobraPy library for metabolic network analysis and constraint-based modeling.

cobrapy
🎯example-skill🎯Skill

Generates comprehensive code examples and documentation templates for software development projects with best practice recommendations.

example-skill
🎯chempy🎯Skill

Performs chemical calculations, molecular modeling, and reaction simulations using Python's ChemPy library for scientific and research applications.

chempy
🎯lifelines🎯Skill

Provides comprehensive health and medical risk assessment by analyzing personal history, genetic data, and lifestyle factors to predict potential health outcomes.

lifelines
🎯fastapi-streamlit🎯Skill

Rapidly build interactive web applications with FastAPI backend and Streamlit frontend, enabling quick data science and machine learning prototyping

fastapi-streamlit
🎯networkx🎯Skill

Analyze and manipulate complex networks, graphs, and relationships using advanced graph theory algorithms and visualization techniques

networkx
🎯ase🎯Skill

Automates advanced software engineering tasks like code analysis, refactoring, architecture design, and generating comprehensive technical documentation.

ase
🎯simpy🎯Skill

Performs symbolic mathematics and numerical computations using SymPy, enabling advanced mathematical modeling, equation solving, and scientific calculations.

simpy
🎯pennylane🎯Skill

Performs quantum computing simulations and variational quantum algorithm design using PennyLane's differentiable quantum programming framework

pennylane
🎯scikit-bio🎯Skill

Performs biological sequence analysis, phylogenetics, and computational genomics using advanced scientific computing tools and algorithms.

scikit-bio
🎯mdanalysis🎯Skill

Performs advanced markdown document analysis, extracting structured insights, headers, code blocks, links, and generating comprehensive document summaries and metadata.

mdanalysis
🎯scanpy🎯Skill

Analyze and process single-cell RNA sequencing data, enabling gene expression profiling, clustering, and visualization of complex biological datasets

scanpy
🎯prody🎯Skill

Generates comprehensive Python project configurations, manages dependencies, and streamlines scientific computing package setup with intelligent template generation

prody
🎯qiskit-hardware🎯Skill

Executes quantum circuit simulations and hardware mapping on IBM Quantum devices using Qiskit, optimizing quantum algorithm performance and resource allocation.

qiskit-hardware
🎯polars🎯Skill

Performs high-performance data manipulation, transformation, and analysis using the Polars DataFrame library for efficient data processing in Python and Rust.

polars
🎯pyscf🎯Skill

Performs quantum chemistry calculations and molecular simulations using Python Scientific Framework (PySCF) for electronic structure analysis

pyscf
🎯openbabel🎯Skill

Converts and manipulates molecular file formats, performs chemical structure transformations, and enables cheminformatics analysis across diverse chemical representations.

openbabel
🎯pyomo🎯Skill

Optimize mathematical models and solve complex optimization problems using Pyomo's powerful algebraic modeling language for linear, nonlinear, and mixed-integer programming.

pyomo
🎯dask🎯Skill

Parallelizes and scales data processing and analytics tasks using distributed computing with Dask for efficient large-scale Python computations

dask
🎯shapely🎯Skill

Performs geometric operations and spatial analysis on vector geometries using Python's Shapely library for GIS and computational geometry tasks.

shapely
🎯pytorch-deployment🎯Skill

Streamlines PyTorch model deployment with optimized export, serving, and inference strategies across cloud and edge environments.

pytorch-deployment
🎯qutip🎯Skill

Performs quantum computing simulations and calculations using QuTiP library for quantum systems, states, dynamics, and visualization

qutip
🎯ortools🎯Skill

Solves complex optimization and scheduling problems using Google's Operations Research tools for linear programming, routing, and constraint satisfaction

ortools
🎯pysam🎯Skill

Analyze and manipulate genomic sequencing data by parsing SAM/BAM/CRAM files with high-performance Python bindings for bioinformatics research

pysam
🎯sunpy🎯Skill

Analyze solar physics data, process solar images, and perform advanced solar research computations using Python's comprehensive solar science library.

sunpy
🎯sympy🎯Skill

Performs symbolic mathematics, calculus, algebra, and equation solving using Python's SymPy library for advanced mathematical computations

sympy
🎯scikit-image🎯Skill

Processes and analyzes digital images using advanced computer vision techniques like filtering, segmentation, feature detection, and transformations.

scikit-image
🎯sklearn-explainability🎯Skill

Provides interpretability techniques for machine learning models using SHAP, LIME, and feature importance to explain complex scikit-learn predictions

sklearn-explainability
🎯statsmodels🎯Skill

Performs advanced statistical modeling and econometric analysis with regression, time series, and hypothesis testing capabilities

statsmodels
🎯sklearn-advanced🎯Skill

Advanced machine learning workflows with scikit-learn, including model selection, hyperparameter tuning, and complex preprocessing techniques

sklearn-advanced
🎯xarray🎯Skill

Manipulates and analyzes multi-dimensional numerical arrays with advanced indexing, computation, and data transformation capabilities for scientific computing

xarray
🎯biopython🎯Skill

Performs bioinformatics data analysis, sequence processing, and computational biology tasks using Python's powerful Biopython library

biopython
🎯h5py🎯Skill

Reads, writes, and manipulates HDF5 scientific data files with Python, enabling efficient storage and analysis of large numerical datasets across domains.

h5py
🎯pandas-performance🎯Skill

Optimizes pandas DataFrame operations with performance tuning techniques, memory reduction strategies, and efficient data processing methods

pandas-performance
🎯scikit-learn🎯Skill

Streamlines machine learning workflows by providing robust tools for data preprocessing, model training, evaluation, and predictive analytics across various algorithms.

scikit-learn
🎯dask-optimization🎯Skill

Optimizes large-scale data processing with Dask, enabling parallel computing and memory-efficient workflows for complex scientific and machine learning tasks

dask-optimization
🎯pyproj🎯Skill

Generates, manages, and configures Python project structures with automated setup for virtual environments, dependencies, and standard project layouts.

pyproj
🎯jax-pde🎯Skill

Solves partial differential equations using JAX's numerical methods, enabling fast scientific computing and machine learning-accelerated simulations

jax-pde
🎯pytorch🎯Skill

Provides expert PyTorch guidance for building, training, and optimizing deep learning models across neural network architectures

pytorch
🎯astropy🎯Skill

Performs astronomical data analysis, coordinate transformations, and astrophysical calculations using Python's powerful scientific computing library

astropy
🎯scikit-video🎯Skill

Processes and analyzes video files using advanced computer vision techniques with scikit-video's comprehensive video processing and feature extraction capabilities

scikit-video
🎯seaborn🎯Skill

Generates advanced statistical visualizations and plots with Python's Seaborn library, transforming complex data into insightful graphics with minimal code.

seaborn
🎯photutils🎯Skill

Performs astronomical image processing and photometry using Python's Photutils library for source detection, aperture photometry, and background estimation.

photutils
🎯qiskit🎯Skill

Enables quantum computing simulations and algorithm development using IBM's Qiskit framework for quantum circuit design and quantum machine learning

qiskit