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alphagenome-mcp

Vibe Index Official🔧MCP Server

taehojo/alphagenome-mcp

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User Description

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AlphaGenome MCP Server provides a natural language interface to Google DeepMind's AlphaGenome variant effect prediction API. Query genomic variants using plain English instead of writing Python code, designed for exploratory analysis and rapid prototyping.

Overview

AlphaGenome MCP Server provides a natural language interface to Google DeepMind's AlphaGenome variant effect prediction API. It lets you query genomic variants using plain English instead of writing Python code, designed for exploratory analysis and rapid prototyping.

Key Features

Natural language queries for genomic variant effect prediction
Integration with Google DeepMind's AlphaGenome API
Pathogenicity scores, expression impact, and splicing effect analysis
Works with Claude Desktop, Claude Code, Gemini CLI, Cursor, and Windsurf
Designed for rapid prototyping without writing Python code

Who is this for?

Bioinformatics researchers and genomics professionals who want to quickly explore variant effects through conversational AI. Ideal for scientists doing exploratory analysis who prefer natural language over scripting.

apicode

Installation

Local ServerAuto-generated from README. View full documentation on GitHub →

claude mcp add alphagenome -- npx -y @jolab/alphagenome-mcp@latest --api-key YOUR_API_KEY

Claude Desktop ConfigurationServer configuration (JSON)

{
  "mcpServers": {
    "alphagenome": {
      "command": "npx",
      "args": [...

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Last UpdatedOct 14, 2025