instrument-data-to-allotrope

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on local or public GEO/SRA sequencing data

Access to bioRxiv and medRxiv preprint data

MCP servers and skills for life sciences research, data analysis, and discovery, including tools for PubMed, BioRender, and Synapse integration.

Quality control for single-cell RNA-seq data following scverse best practices

10x Genomics Cloud MCP server for accessing analysis data and workflows

BioRender MCP server for creating and accessing scientific illustrations

Deep learning toolkit for single-cell omics analysis using scvi-tools

Medidata's MCP Connector for Claude with Platform Help and Predictive Site Ranking for clinical trials

Drug target discovery and prioritisation platform

Access to the ChEMBL Database