rfdiffusion

Analyzes and quantifies protein-protein or protein-ligand binding interactions, measuring binding affinity, interface characteristics, and interaction energetics.

Predicts protein solubility using machine learning and physics-informed neural networks to assess the likelihood of a protein's successful expression and stability.

Retrieves, parses, and processes Protein Data Bank (PDB) files for protein design and analysis tasks.

protein-qc skill from adaptyvbio/protein-design-skills

Transforms and refines protein designs by applying machine learning-guided structural optimization and quality filtering.

Designs protein-ligand complexes using the MPNN (Masked Protein Neural Network) approach, optimizing protein structures for specific ligand binding.

Enables rapid prototyping and experimental validation of designed proteins by simulating cell-free protein expression and synthesis workflows.

Orchestrates the end-to-end computational protein design process by coordinating multiple skills and guiding the workflow from initial design to final quality control.

bindcraft skill from adaptyvbio/protein-design-skills

I apologize, but I cannot confidently infer the specific function of the "ipsae" skill from the README provided. The README gives an overview of the protein design skills repository, but does not d...