deeptools

Retrieves, parses, and analyzes protein structural data from Protein Data Bank (PDB) files for scientific research and molecular visualization

Performs advanced machine learning path analysis, feature extraction, and predictive modeling for complex scientific and biomedical datasets.

Processes and analyzes digital pathology whole slide images with advanced tissue segmentation, feature extraction, and computational pathology techniques

Compares and matches mass spectrometry spectral data across datasets, enabling peak alignment, similarity scoring, and spectral library searching.

Streamlines medical imaging data processing, standardization, and analysis across DICOM, NIfTI, and other scientific image formats

Helps researchers and academics craft precise, clear scientific manuscripts with structured writing, proper citations, and discipline-specific language optimization

Transforms complex data and research into visually compelling, scientifically accurate infographics with clear design and precise data representation

Generates astronomical database queries, retrieves celestial object data, and performs complex astrophysical calculations across multiple scientific catalogs.

Provides structured, comprehensive scientific manuscript review guidance with detailed feedback on methodology, results interpretation, and potential improvements.

Retrieves, queries, and analyzes protein structure predictions from AlphaFold's comprehensive database for scientific research and computational biology