starlitnightly/omicverse

25 resources in this repository

🎯25Skills

919

🎯Skills25

🎯bulk-rna-seq-deseq2-analysis-with-omicverse🎯Skill

A skill for performing bulk RNA-seq DESeq2 differential expression analysis using OmicVerse, a multi-language framework for single-cell and bulk genomics data analysis.

bulk-rna-seq-deseq2-analysis-with-omicverse

🎯single-cell-annotation-skills-with-omicverse🎯Skill

A Python package for multi-omics analysis including bulk, single-cell, and spatial RNA-seq data, published in Nature Communications, providing comprehensive bioinformatics workflows within the scverse ecosystem.

single-cell-annotation-skills-with-omicverse

🎯single-cell-multi-omics-integration🎯Skill

Skill

single-cell-multi-omics-integration

🎯single-cell-cellphonedb-communication-mapping🎯Skill

Skill

single-cell-cellphonedb-communication-mapping

🎯bulk-rna-seq-differential-expression-with-omicverse🎯Skill

Skill

bulk-rna-seq-differential-expression-with-omicverse

🎯single-cell-preprocessing-with-omicverse🎯Skill

Skill

single-cell-preprocessing-with-omicverse

🎯string-protein-interaction-analysis-with-omicverse🎯Skill

Skill

string-protein-interaction-analysis-with-omicverse

🎯tcga-bulk-data-preprocessing-with-omicverse🎯Skill

Skill

tcga-bulk-data-preprocessing-with-omicverse

🎯bulk-wgcna-analysis-with-omicverse🎯Skill

Skill

bulk-wgcna-analysis-with-omicverse

🎯omicverse-visualization-for-bulk-color-systems-and-single-cell-d🎯Skill

Skill

omicverse-visualization-for-bulk-color-systems-and-single-cell-d

🎯bulktrajblend-trajectory-interpolation🎯Skill

Skill

bulktrajblend-trajectory-interpolation

🎯bulk-rna-seq-deconvolution-with-bulk2single🎯Skill

OmicVerse is a comprehensive Python package for multi-omics analysis including bulk, single-cell, and spatial RNA-seq data. Provides tools for RNA-seq deconvolution, gene regulatory networks, and integrative multi-omics workflows.

bulk-rna-seq-deconvolution-with-bulk2single

🎯single-cell-clustering-and-batch-correction-with-omicverse🎯Skill

Skill

single-cell-clustering-and-batch-correction-with-omicverse

🎯spatial-transcriptomics-tutorials-with-omicverse🎯Skill

Skill

spatial-transcriptomics-tutorials-with-omicverse

🎯bulk-rna-seq-batch-correction-with-combat🎯Skill

Skill

bulk-rna-seq-batch-correction-with-combat

🎯data-stats-analysis🎯Skill

A skill for data statistics analysis within OmicVerse, a comprehensive Python library for multi-omics data analysis spanning bulk RNA-seq, single-cell RNA-seq, spatial transcriptomics, and more.

data-stats-analysis

🎯single-cell-downstream-analysis🎯Skill

Skill

single-cell-downstream-analysis

🎯data-export-pdf🎯Skill

Skill

data-export-pdf

🎯data-viz-plots🎯Skill

Skill

data-viz-plots

🎯gsea-enrichment-analysis🎯Skill

Skill