Collection24 items

starlitnightly/omicverse

2stars

🎯Skills24

Transforms and preprocesses data locally using pandas and numpy, compatible with all LLM providers, enabling cleaning, normalization, reshaping, and feature engineering.

data-transform

🎯data-stats-analysis🎯Skill

data-stats-analysis skill from starlitnightly/omicverse

data-stats-analysis

🎯bulk-rna-seq-deseq2-analysis-with-omicverse🎯Skill

Performs differential gene expression analysis on bulk RNA-seq data using DESeq2 within the Omicverse computational framework, identifying statistically significant gene expression changes between ...

bulk-rna-seq-deseq2-analysis-with-omicverse

🎯single2spatial-spatial-mapping🎯Skill

Transforms single-cell transcriptomics data into spatially resolved tissue maps, enabling precise localization of cellular gene expression patterns.

single2spatial-spatial-mapping

🎯tcga-bulk-data-preprocessing-with-omicverse🎯Skill

tcga-bulk-data-preprocessing-with-omicverse skill from starlitnightly/omicverse

tcga-bulk-data-preprocessing-with-omicverse

🎯single-cell-annotation-skills-with-omicverse🎯Skill

single-cell-annotation-skills-with-omicverse skill from starlitnightly/omicverse

single-cell-annotation-skills-with-omicverse

🎯data-viz-plots🎯Skill

Generates publication-quality scientific visualizations using matplotlib and seaborn across multiple plot types, compatible with all LLM providers.

data-viz-plots

🎯omicverse-visualization-for-bulk-color-systems-and-single-cell-d🎯Skill

omicverse-visualization-for-bulk-color-systems-and-single-cell-d skill from starlitnightly/omicverse

omicverse-visualization-for-bulk-color-systems-and-single-cell-d

🎯data-export-excel🎯Skill

data-export-excel skill from starlitnightly/omicverse

data-export-excel

🎯single-cell-clustering-and-batch-correction-with-omicverse🎯Skill

single-cell-clustering-and-batch-correction-with-omicverse skill from starlitnightly/omicverse

single-cell-clustering-and-batch-correction-with-omicverse

🎯bulk-wgcna-analysis-with-omicverse🎯Skill

Performs weighted gene correlation network analysis (WGCNA) on bulk RNA sequencing data using the Omicverse computational biology framework.

bulk-wgcna-analysis-with-omicverse

🎯bulk-rna-seq-batch-correction-with-combat🎯Skill

bulk-rna-seq-batch-correction-with-combat skill from starlitnightly/omicverse

bulk-rna-seq-batch-correction-with-combat

🎯bulk-rna-seq-deconvolution-with-bulk2single🎯Skill

bulk-rna-seq-deconvolution-with-bulk2single skill from starlitnightly/omicverse

bulk-rna-seq-deconvolution-with-bulk2single

🎯bulktrajblend-trajectory-interpolation🎯Skill

bulktrajblend-trajectory-interpolation skill from starlitnightly/omicverse

bulktrajblend-trajectory-interpolation

🎯single-cell-cellphonedb-communication-mapping🎯Skill

single-cell-cellphonedb-communication-mapping skill from starlitnightly/omicverse

single-cell-cellphonedb-communication-mapping

🎯single-trajectory-analysis🎯Skill

single-trajectory-analysis skill from starlitnightly/omicverse

single-trajectory-analysis

🎯spatial-transcriptomics-tutorials-with-omicverse🎯Skill

spatial-transcriptomics-tutorials-with-omicverse skill from starlitnightly/omicverse

spatial-transcriptomics-tutorials-with-omicverse

🎯single-cell-preprocessing-with-omicverse🎯Skill

single-cell-preprocessing-with-omicverse skill from starlitnightly/omicverse

single-cell-preprocessing-with-omicverse

🎯gsea-enrichment-analysis🎯Skill

gsea-enrichment-analysis skill from starlitnightly/omicverse

gsea-enrichment-analysis

🎯bulk-rna-seq-differential-expression-with-omicverse🎯Skill

bulk-rna-seq-differential-expression-with-omicverse skill from starlitnightly/omicverse

bulk-rna-seq-differential-expression-with-omicverse

🎯string-protein-interaction-analysis-with-omicverse🎯Skill

Analyzes protein-protein interactions using STRING database network data, enabling comprehensive molecular interaction mapping and network-based biological insights.

string-protein-interaction-analysis-with-omicverse

🎯single-cell-downstream-analysis🎯Skill

single-cell-downstream-analysis skill from starlitnightly/omicverse

single-cell-downstream-analysis

🎯data-export-pdf🎯Skill

Exports complex scientific datasets from Omicverse to structured, publication-ready PDF reports with customizable visualization and formatting options.

data-export-pdf

🎯single-cell-multi-omics-integration🎯Skill

single-cell-multi-omics-integration skill from starlitnightly/omicverse

single-cell-multi-omics-integration

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